miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|28320210|gb|BU712839.1|BU712839 GTCAACCTAGTTTTGTCACGATATTCTCGGTTTATTGAACTTGCAAGCTAGTACAAAGCTAGTCTGATTCACTATGAAAG
GCTGATTTGGCGCTGTATTTTCTTGTTTTTATCCAAGTACCGAGATTATTATCCAAAAATTAGATGGTTTATTTAGTTCA
GTGTACAAACAACATCAAATTGCCAAGTCAAAAATGAATCGTTTGAGAAGAACATTCAGCTTTCGAAAACGTAAAAAGCA
GAATAGGAGTGAGGCTGGTGATTCTTCAAAACCACAACAGTGGTTAGATGATGAAGTGAAAATCAAGGAGGGATTCTGTA
GCTTTCAAGTTAAATACTTAGGGAACATTGAAGTCTACGAGTCAAGAGGAATGCAAGTGTGTGAAGAAGCAATTAAGGCA
TTAAGAAAATCAAAGAAGAAACCCCAAAAAGCCGTCTTATCTGTTAGTGGTGACGCTTTACGCGTTTCAGATGACGTTAG
TCAGCACCTCATCGTCGATCAGACTATTGAAAAAGTCTCGTTCTGTGCACCTGATCGAAACCATGAAAAAGGATTTGCCT
ATATATGTCGCGATGGCGCTACTCGCCGTTGGATGTGTCATGCCTTTCTTGCTGTCAAGGAGTNCGGTGAACGATTGTCT
CATGCAGTTGGATGTGCTTTTG




Most similar to sp|P16554|NUMB_DROME

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P16554|NUMB_DROME Protein numb OS=Drosophila melanogaster
           GN=numb PE=1 SV=2
          Length = 556

 Score =  221 bits (564), Expect = 2e-57
 Identities = 108/171 (63%), Positives = 134/171 (78%), Gaps = 2/171 (1%)
 Frame = +2

Query: 155 SSVYKQHQIAKSKMNRLRRTF--SFRKRKKQNRSEAGDSSKPQQWLDDEVKIKEGFCSFQ 328
           S+ ++  + +  KM+RLRR+F  SFR+RK +      +SSKP QW  DE  ++   CSF 
Sbjct: 29  SASFRFSKKSPKKMDRLRRSFRDSFRRRKDR----VPESSKPHQWQADEEAVRSATCSFS 84

Query: 329 VKYLGNIEVYESRGMQVCEEAIKALRKSKKKPQKAVLSVSGDALRVSDDVSQHLIVDQTI 508
           VKYLG +EV+ESRGMQVCEEA+K LR+S+++P + +L VSGD LRV DD ++ LIVDQTI
Sbjct: 85  VKYLGCVEVFESRGMQVCEEALKVLRQSRRRPVRGLLHVSGDGLRVVDDETKGLIVDQTI 144

Query: 509 EKVSFCAPDRNHEKGFAYICRDGATRRWMCHAFLAVKEXGERLSHAVGCAF 661
           EKVSFCAPDRNHE+GF+YICRDG TRRWMCH FLA K+ GERLSHAVGCAF
Sbjct: 145 EKVSFCAPDRNHERGFSYICRDGTTRRWMCHGFLACKDSGERLSHAVGCAF 195